connector - Streamlining Data Access in Clinical Research
Provides a consistent interface for connecting R to various data sources including file systems and databases. Designed for clinical research, 'connector' streamlines access to 'ADAM', 'SDTM' for example. It helps to deal with multiple data formats through a standardized API and centralized configuration.
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8.52 score 22 stars 3 dependents 24 scripts 455 downloads
mighty.metadata - Manage 'CDISC' 'ADaM' Dataset Specifications in 'YAML' Format
Load, validate, and manipulate Clinical Data Interchange Standards Consortium ('CDISC') Analysis Data Model ('ADaM') dataset metadata stored as 'YAML' files. Metadata files are validated against a JSON schema. Provides functions to inspect and modify columns, parameters, and row-level operations within and across 'ADaM' domains. Designed for use with the 'mighty' framework.
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7.54 score 2 stars 1 dependents 4 scripts 334 downloads
whirl - Log Execution of Scripts
Logging of scripts suitable for clinical trials using 'Quarto' to create nice human readable logs. 'whirl' enables execution of scripts in batch, while simultaneously creating logs for the execution of each script, and providing an overview summary log of the entire batch execution.
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quarto
6.89 score 20 stars 10 scripts 312 downloads
S7schema - 'S7' Framework for Schema-Validated YAML Configuration
Provides a generic framework for working with YAML (YAML Ain't Markup Language) configuration files. Uses 'ajv' (Another JSON Schema Validator) via 'V8' to validate configurations against JSON Schema definitions. Configuration objects inherit from 'S7' classes and base lists, supporting downstream extension through custom classes and methods.
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6.64 score 4 stars 2 dependents 5 scripts 276 downloads
connector.databricks - Expand 'connector' Package for 'Databricks' Tables and Volumes
Expands the 'connector' <https://github.com/NovoNordisk-OpenSource/connector> package and provides a convenient interface for accessing and interacting with 'Databricks' <https://www.databricks.com> volumes and tables directly from R.
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6.03 score 6 stars 5 scripts 366 downloads
zephyr - Structured Messages and Options
Provides a structured framework for consistent user communication and configuration management for package developers.
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5.78 score 5 stars 8 dependents 2 scripts 503 downloads
postcard - Estimating Marginal Effects with Prognostic Covariate Adjustment
Conduct power analyses and inference of marginal effects. Uses plug-in estimation and influence functions to perform robust inference, optionally leveraging historical data to increase precision with prognostic covariate adjustment. The methods are described in Højbjerre-Frandsen et al. (2025) <doi:10.48550/arXiv.2503.22284>.
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5.08 score 2 stars 10 scripts 250 downloads
connector.sharepoint - 'Microsoft SharePoint' Interface for the 'connector' Package
Extends the 'connector' package to provide a convenient interface for accessing and interacting with 'Microsoft SharePoint' directly from 'R'. Supports listing, reading, writing, uploading, downloading, and removing files and directories on 'SharePoint' document libraries. Authentication is handled through 'Azure' tokens via the 'AzureAuth' package.
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4.78 score 1 stars 6 scripts 334 downloads
mighty.component - Mighty Components for ADaM Generation
Reusable code templates ('components') for the 'mighty' framework, used to generate Analysis Data Model (ADaM) programs. Components are 'Mustache' templates documented with 'roxygen2'-like tags. They can be retrieved from local directories, 'GitHub' or URLs, rendered with study-specific parameters, validated, evaluated, and unit tested with code coverage.
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4.65 score 1 stars 1 dependents 5 scripts