Creating a new connector | Create custom generic method | Use extra class for simple customization | Special handling of files | Add new file format
Package: connector 1.0.0.9003
Cervan Girard
connector: Streamlining Data Access in Clinical Research
Provides a consistent interface for connecting R to various data sources including file systems and databases. Designed for clinical research, 'connector' streamlines access to 'ADAM', 'SDTM' for example. It helps to deal with multiple data formats through a standardized API and centralized configuration.
Authors:
connector_1.0.0.9003.tar.gz
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connector_1.0.0.9003.tgz(r-4.6-any)connector_1.0.0.9003.tgz(r-4.5-any)
connector_1.0.0.9003.tar.gz(r-4.7-any)connector_1.0.0.9003.tar.gz(r-4.6-any)
connector_1.0.0.9003.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
connector/json (API)
| # Install 'connector' in R: |
| install.packages('connector', repos = c('https://novonordisk-opensource.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/novonordisk-opensource/connector/issues
Pkgdown/docs site:https://novonordisk-opensource.github.io
Last updated from:97a337a171. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 159 | ||
| source / vignettes | OK | 248 | ||
| linux-release-x86_64 | OK | 160 | ||
| macos-release-arm64 | OK | 110 | ||
| macos-oldrel-arm64 | OK | 83 | ||
| windows-devel | OK | 124 | ||
| windows-release | OK | 115 | ||
| windows-oldrel | OK | 92 | ||
| wasm-release | OK | 134 |
Exports:add_datasourceadd_logsadd_metadatacheck_resourceconnectConnectorconnector_dbiconnector_fsConnectorDBIConnectorFSConnectorLoggerconnectorscreate_directory_cntdisconnect_cntdownload_cntdownload_directory_cntextract_metadatalist_content_cntlist_datasourceslog_list_content_connectorlog_read_connectorlog_remove_connectorlog_write_connectornested_connectorsread_cntread_extread_fileremove_cntremove_datasourceremove_directory_cntremove_metadatatbl_cntupload_cntupload_directory_cntuse_connectorvalidate_resourcewrite_cntwrite_datasourceswrite_extwrite_file
Dependencies:arrowassertthatbackportsbitbit64cellrangercheckmateclicliprcpp11crayonDBIdplyrforcatsfsgenericsgluehavenhmsjsonlitelifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrreadxlrematchrlangS7tibbletidyselecttzdbutf8vctrsvroomwithrwritexlyamlzephyr
How to extend connector
Last update: 2025-08-20
Started: 2024-08-05
connector
Introduction | Connector configuration | Working example
Last update: 2025-08-19
Started: 2024-05-23
Understanding Connector Package Methods
Introduction | Methods and Return Values | Detailed Explanations | read_cnt() | write_cnt() | list_content_cnt() | remove_cnt() | download_cnt() | upload_cnt() | create_directory_cnt() | remove_directory_cnt() | upload_directory_cnt() | download_directory_cnt() | tbl_cnt()
Last update: 2025-08-19
Started: 2025-08-19
Using connector without YAML files
Creating Individual Connectors | File System Connector | Database Connector | Using Individual Connectors | Creating Multiple Connectors with connectors() | Working with Multiple Connectors | Mixed Storage Types | Summary
Last update: 2025-08-19
Started: 2025-07-03
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add a new datasource to a YAML configuration file | add_datasource |
| Add Logging Capability to Connections | add_logs |
| Add metadata to a YAML configuration file | add_metadata |
| Connect to datasources specified in a config file | connect |
| General connector object | Connector connector |
| Create 'dbi' connector | connector_dbi |
| Create 'fs' connector | connector_fs |
| Options for connector | connector-options |
| Connector for DBI databases | ConnectorDBI |
| Connector for file storage | ConnectorFS |
| Create a New Connector Logger | ConnectorLogger print.ConnectorLogger |
| Collection of connector objects | connectors |
| Create a directory | create_directory_cnt create_directory_cnt.ConnectorFS |
| Disconnect (close) the connection of the connector | disconnect_cnt disconnect_cnt.ConnectorDBI |
| Download content from the connector | download_cnt download_cnt.ConnectorFS download_cnt.ConnectorLogger |
| Download a directory | download_directory_cnt download_directory_cnt.ConnectorFS |
| Extract metadata from connectors | extract_metadata |
| List available content from the connector | list_content_cnt list_content_cnt.ConnectorDBI list_content_cnt.ConnectorFS list_content_cnt.ConnectorLogger |
| Extract data sources from connectors | list_datasources |
| Connector Logging Functions | log-functions log_list_content_connector log_read_connector log_read_connector.ConnectorDBI log_read_connector.ConnectorFS log_read_connector.default log_remove_connector log_remove_connector.ConnectorDBI log_remove_connector.ConnectorFS log_remove_connector.default log_write_connector log_write_connector.ConnectorDBI log_write_connector.ConnectorFS log_write_connector.default |
| Create a nested connectors object | nested_connectors |
| Read content from the connector | read_cnt read_cnt.ConnectorDBI read_cnt.ConnectorFS read_cnt.ConnectorLogger |
| Read files based on the extension | read_ext read_ext.csv read_ext.default read_ext.json read_ext.parquet read_ext.rds read_ext.sas7bdat read_ext.txt read_ext.xlsx read_ext.xpt read_ext.yml read_file |
| Remove content from the connector | remove_cnt remove_cnt.ConnectorDBI remove_cnt.ConnectorFS remove_cnt.ConnectorLogger |
| Remove a datasource from a YAML configuration file | remove_datasource |
| Remove a directory | remove_directory_cnt remove_directory_cnt.ConnectorFS |
| Remove metadata from a YAML configuration file | remove_metadata |
| Resource Validation System for Connector Objects | check_resource check_resource.Connector check_resource.ConnectorFS resource-validation validate_resource |
| Use dplyr verbs to interact with the remote database table | tbl_cnt tbl_cnt.ConnectorDBI tbl_cnt.ConnectorFS tbl_cnt.ConnectorLogger |
| Upload content to the connector | upload_cnt upload_cnt.ConnectorFS upload_cnt.ConnectorLogger |
| Upload a directory | upload_directory_cnt upload_directory_cnt.ConnectorFS |
| Use connector | use_connector |
| Write content to the connector | write_cnt write_cnt.ConnectorDBI write_cnt.ConnectorFS write_cnt.ConnectorLogger |
| Write datasources attribute into a config file | write_datasources |
| Write files based on the extension | write_ext write_ext.csv write_ext.json write_ext.parquet write_ext.rds write_ext.txt write_ext.xlsx write_ext.xpt write_ext.yml write_file |