Introduction | Ways to call the run() function | Single and multiple files, and wild cards | Using list() as input | Using a configuration file as input | Adjusting the log directory | How to use the log_dir argument to specify where to store the logs
Package: whirl 0.3.2.9002
Aksel Thomsen
whirl: Log Execution of Scripts
Logging of scripts suitable for clinical trials using 'Quarto' to create nice human readable logs. 'whirl' enables execution of scripts in batch, while simultaneously creating logs for the execution of each script, and providing an overview summary log of the entire batch execution.
Authors:
whirl_0.3.2.9002.tar.gz
whirl_0.3.2.9002.zip(r-4.7)whirl_0.3.2.9002.zip(r-4.6)whirl_0.3.2.9002.zip(r-4.5)
whirl_0.3.2.9002.tgz(r-4.6-any)whirl_0.3.2.9002.tgz(r-4.5-any)
whirl_0.3.2.9002.tar.gz(r-4.7-any)whirl_0.3.2.9002.tar.gz(r-4.6-any)
whirl_0.3.2.9002.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
whirl/json (API)
| # Install 'whirl' in R: |
| install.packages('whirl', repos = c('https://novonordisk-opensource.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/novonordisk-opensource/whirl/issues
Pkgdown/docs site:https://novonordisk-opensource.github.io
Last updated from:e6a2a863ef. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 287 | ||
| source / vignettes | OK | 206 | ||
| linux-release-x86_64 | NOTE | 327 | ||
| macos-release-arm64 | NOTE | 300 | ||
| macos-oldrel-arm64 | NOTE | 225 | ||
| windows-devel | NOTE | 438 | ||
| windows-release | NOTE | 366 | ||
| windows-oldrel | NOTE | 355 | ||
| wasm-release | OK | 136 |
Exports:log_deletelog_readlog_writerunuse_biocomputeuse_whirlwrite_biocompute
Dependencies:base64encbslibcachemcallrclicpp11digestdplyrevaluatefarverfastmapfontawesomefsgenericsglueherehighrhtmltoolsjquerylibjsonlitekableExtraknitrlabelinglaterlatticelifecyclemagrittrMatrixmemoisemimeotelpillarpkgconfigpngprocessxpspurrrquartoR6rappdirsRColorBrewerRcppRcppTOMLrenvreticulaterlangrmarkdownrprojrootrstudioapisassscalessessioninfostringistringrsvglitesystemfontstextshapingtibbletidyselecttinytexunglueutf8vctrsviridisLitewithrxfunxml2yamlzephyr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Helper function to log custom messages | custom_logging log_delete log_read log_write |
| Execute single or multiple R, R Markdown, and Quarto scripts | run |
| Use whirl to create biocompute logs | use_biocompute |
| Use whirl | use_whirl |
| Options for whirl | whirl-options |
| Create biocompute logs | write_biocompute |