{ "_id": "6ad220ad475807f7554a5eb6", "Package": "connector", "Title": "Streamlining Data Access in Clinical Research", "Version": "1.0.0.9004", "Authors@R": "c(\nperson(\"Cervan\", \"Girard\", , \"cgid@novonordisk.com\", role = c(\"aut\", \"cre\")),\nperson(\"Aksel\", \"Thomsen\", , \"oath@novonordisk.com\", role = \"aut\"),\nperson(\"Vladimir\", \"Obucina\", , \"vlob@novonordisk.com\", role = \"aut\"),\nperson(\"Novo Nordisk A/S\", role = \"cph\")\n)", "Description": "Provides a consistent interface for connecting R to\nvarious data sources including file systems and databases.\nDesigned for clinical research, 'connector' streamlines access\nto 'ADAM', 'SDTM' for example. It helps to deal with multiple\ndata formats through a standardized API and centralized\nconfiguration.", "License": "Apache License (>= 2)", "URL": "https://novonordisk-opensource.github.io/connector/,\nhttps://github.com/NovoNordisk-OpenSource/connector/", "BugReports": "https://github.com/NovoNordisk-OpenSource/connector/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE, r6 = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev libx11-dev\nzlib1g-dev", "Repository": "https://novonordisk-opensource.r-universe.dev", "Date/Publication": "2026-07-06 10:16:24 UTC", "RemoteUrl": "https://github.com/NovoNordisk-OpenSource/connector", "RemoteRef": "HEAD", "RemoteSha": "93620e6bca65325c80655192b04d9be082e9cf0e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 12:45:43 UTC", "User": "root" }, "Author": "Cervan Girard [aut, cre],\nAksel Thomsen [aut],\nVladimir Obucina [aut],\nNovo Nordisk A/S [cph]", "Maintainer": "Cervan Girard ", "_user": "novonordisk-opensource", "_type": "src", "_file": "connector_1.0.0.9004.tar.gz", "_fileid": "https://r2.ropensci.org/19908f551206b1f6523316af5b9b140e0b5d134c73a04011191b6ec3de278478", "_filesize": 535421, "_sha256": "19908f551206b1f6523316af5b9b140e0b5d134c73a04011191b6ec3de278478", "_expires": "2027-01-24T13:03:38.000Z", "_created": "2026-10-16T12:45:43.000Z", "_published": "2026-10-16T13:03:40.699Z", "_buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 116979088327, "time": 158, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12047232164" }, { "job": 116979088397, "time": 146, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12047191870" }, { "job": 116979088274, "time": 150, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "12047631723" }, { "job": 116979088251, "time": 136, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12047551889" }, { "job": 116977677271, "time": 206, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12046782943" }, { "job": 116979088288, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12047340229" }, { "job": 116979088270, "time": 117, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12047360035" }, { "job": 116979088173, "time": 104, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12046757195" }, { "job": 116979088429, "time": 101, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12047350033" } ], "_upstream": "https://github.com/NovoNordisk-OpenSource/connector", "_commit": { "id": "93620e6bca65325c80655192b04d9be082e9cf0e", "author": "Aksel Thomsen ", "committer": "GitHub ", "message": "chore: pin reusable workflows and postgres image (#150)\n\n* chore: pin reusable workflows to v0.1.0\n\n* chore: add dependabot for github-actions\n\n* chore: bump version to 1.0.0.9004\n\n* chore: pin postgres image to digest\n\n* chore: use docker-compose for postgres to enable dependabot\n\n* chore: remove dead env block from caller workflow\n\n* Potential fix for pull request finding 'CodeQL / Code injection'\n\nCo-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>\nSigned-off-by: Aksel Thomsen \n\n* chore: ignore demo_trial fixtures in jscpd\n\n---------\n\nSigned-off-by: Aksel Thomsen \nCo-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>", "time": 1783332984 }, "_maintainer": { "name": "Cervan Girard", "email": "cgid@novonordisk.com" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "arrow", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "DBI", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "fs", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "haven", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "R6", "version": ">= 2.4.0", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "S7", "version": ">= 0.2.0", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "vroom", "role": "Imports" }, { "package": "writexl", "role": "Imports" }, { "package": "yaml", "role": "Imports" }, { "package": "zephyr", "version": ">= 0.1.1", "role": "Imports" }, { "package": "dbplyr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "RPostgres", "role": "Suggests" }, { "package": "RSQLite", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" }, { "package": "usethis", "role": "Suggests" }, { "package": "whirl", "version": ">= 0.2.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "novonordisk-opensource", "_selfowned": true, "_usedby": 3, "_updates": [ { "week": "2025-51", "n": 1 }, { "week": "2026-06", "n": 2 }, { "week": "2026-12", "n": 1 }, { "week": "2026-15", "n": 1 }, { "week": "2026-28", "n": 1 } ], "_tags": [], "_stars": 23, "_contributors": [ { "user": "akselthomsen", "count": 42, "uuid": 14150030 }, { "user": "cervangirard", "count": 38, "uuid": 37626302 }, { "user": "vladimirobucina", "count": 25, "uuid": 44030997 }, { "user": "nnsffl", "count": 16, "uuid": 85879652 }, { "user": "nnktqn", "count": 2, "uuid": 86046048 }, { "user": "falgreen", "count": 2, "uuid": 3070209 }, { "user": "ari-stotle-max", "count": 1, "uuid": 85683724 }, { "user": "troejelsgaard", "count": 1, "uuid": 179106548 } ], "_userbio": { "uuid": 129066790, "type": "organization", "name": "NovoNordisk-OpenSource", "followers": 58 }, "_downloads": { "count": 452, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/connector" }, "_devurl": "https://github.com/novonordisk-opensource/connector", "_pkgdown": "https://novonordisk-opensource.github.io/connector/", "_searchresults": 25, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/connector.html", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/novonordisk-opensource/connector", "_realowner": "novonordisk-opensource", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2025-04-25" }, { "version": "0.1.1", "date": "2025-05-09" }, { "version": "1.0.0", "date": "2025-08-19" } ], "_exports": [ "add_datasource", "add_logs", "add_metadata", "check_resource", "connect", "Connector", "connector_dbi", "connector_fs", "ConnectorDBI", "ConnectorFS", "ConnectorLogger", "connectors", "create_directory_cnt", "disconnect_cnt", "download_cnt", "download_directory_cnt", "extract_metadata", "list_content_cnt", "list_datasources", "log_list_content_connector", "log_read_connector", "log_remove_connector", "log_write_connector", "nested_connectors", "read_cnt", "read_ext", "read_file", "remove_cnt", "remove_datasource", "remove_directory_cnt", "remove_metadata", "tbl_cnt", "upload_cnt", "upload_directory_cnt", "use_connector", "validate_resource", "write_cnt", "write_datasources", "write_ext", "write_file" ], "_help": [ { "page": "add_datasource", "title": "Add a new datasource to a YAML configuration file", "topics": [ "add_datasource" ] }, { "page": "add_logs", "title": "Add Logging Capability to Connections", "topics": [ "add_logs" ] }, { "page": "add_metadata", "title": "Add metadata to a YAML configuration file", "topics": [ "add_metadata" ] }, { "page": "connect", "title": "Connect to datasources specified in a config file", "topics": [ "connect" ] }, { "page": "Connector", "title": "General connector object", "topics": [ "Connector", "connector" ] }, { "page": "connector_dbi", "title": "Create 'dbi' connector", "topics": [ "connector_dbi" ] }, { "page": "connector_fs", "title": "Create 'fs' connector", "topics": [ "connector_fs" ] }, { "page": "connector-options", "title": "Options for connector", "topics": [ "connector-options" ] }, { "page": "ConnectorDBI", "title": "Connector for DBI databases", "topics": [ "ConnectorDBI" ] }, { "page": "ConnectorFS", "title": "Connector for file storage", "topics": [ "ConnectorFS" ] }, { "page": "ConnectorLogger", "title": "Create a New Connector Logger", "topics": [ "ConnectorLogger", "print.ConnectorLogger" ] }, { "page": "connectors", "title": "Collection of connector objects", "topics": [ "connectors" ] }, { "page": "create_directory_cnt", "title": "Create a directory", "topics": [ "create_directory_cnt", "create_directory_cnt.ConnectorFS" ] }, { "page": "disconnect_cnt", "title": "Disconnect (close) the connection of the connector", "topics": [ "disconnect_cnt", "disconnect_cnt.ConnectorDBI" ] }, { "page": "download_cnt", "title": "Download content from the connector", "topics": [ "download_cnt", "download_cnt.ConnectorFS", "download_cnt.ConnectorLogger" ] }, { "page": "download_directory_cnt", "title": "Download a directory", "topics": [ "download_directory_cnt", "download_directory_cnt.ConnectorFS" ] }, { "page": "extract_metadata", "title": "Extract metadata from connectors", "topics": [ "extract_metadata" ] }, { "page": "list_content_cnt", "title": "List available content from the connector", "topics": [ "list_content_cnt", "list_content_cnt.ConnectorDBI", "list_content_cnt.ConnectorFS", "list_content_cnt.ConnectorLogger" ] }, { "page": "list_datasources", "title": "Extract data sources from connectors", "topics": [ "list_datasources" ] }, { "page": "log-functions", "title": "Connector Logging Functions", "topics": [ "log-functions", "log_list_content_connector", "log_read_connector", "log_read_connector.ConnectorDBI", "log_read_connector.ConnectorFS", "log_read_connector.default", "log_remove_connector", "log_remove_connector.ConnectorDBI", "log_remove_connector.ConnectorFS", "log_remove_connector.default", "log_write_connector", "log_write_connector.ConnectorDBI", "log_write_connector.ConnectorFS", "log_write_connector.default" ] }, { "page": "nested_connectors", "title": "Create a nested connectors object", "topics": [ "nested_connectors" ] }, { "page": "read_cnt", "title": "Read content from the connector", "topics": [ "read_cnt", "read_cnt.ConnectorDBI", "read_cnt.ConnectorFS", "read_cnt.ConnectorLogger" ] }, { "page": "read_file", "title": "Read files based on the extension", "topics": [ "read_ext", "read_ext.csv", "read_ext.default", "read_ext.json", "read_ext.parquet", "read_ext.rds", "read_ext.sas7bdat", "read_ext.txt", "read_ext.xlsx", "read_ext.xpt", "read_ext.yml", "read_file" ] }, { "page": "remove_cnt", "title": "Remove content from the connector", "topics": [ "remove_cnt", "remove_cnt.ConnectorDBI", "remove_cnt.ConnectorFS", "remove_cnt.ConnectorLogger" ] }, { "page": "remove_datasource", "title": "Remove a datasource from a YAML configuration file", "topics": [ "remove_datasource" ] }, { "page": "remove_directory_cnt", "title": "Remove a directory", "topics": [ "remove_directory_cnt", "remove_directory_cnt.ConnectorFS" ] }, { "page": "remove_metadata", "title": "Remove metadata from a YAML configuration file", "topics": [ "remove_metadata" ] }, { "page": "resource-validation", "title": "Resource Validation System for Connector Objects", "topics": [ "check_resource", "check_resource.Connector", "check_resource.ConnectorFS", "resource-validation", "validate_resource" ] }, { "page": "tbl_cnt", "title": "Use dplyr verbs to interact with the remote database table", "topics": [ "tbl_cnt", "tbl_cnt.ConnectorDBI", "tbl_cnt.ConnectorFS", "tbl_cnt.ConnectorLogger" ] }, { "page": "upload_cnt", "title": "Upload content to the connector", "topics": [ "upload_cnt", "upload_cnt.ConnectorFS", "upload_cnt.ConnectorLogger" ] }, { "page": "upload_directory_cnt", "title": "Upload a directory", "topics": [ "upload_directory_cnt", "upload_directory_cnt.ConnectorFS" ] }, { "page": "use_connector", "title": "Use connector", "topics": [ "use_connector" ] }, { "page": "write_cnt", "title": "Write content to the connector", "topics": [ "write_cnt", "write_cnt.ConnectorDBI", "write_cnt.ConnectorFS", "write_cnt.ConnectorLogger" ] }, { "page": "write_datasources", "title": "Write datasources attribute into a config file", "topics": [ "write_datasources" ] }, { "page": "write_file", "title": "Write files based on the extension", "topics": [ "write_ext", "write_ext.csv", "write_ext.json", "write_ext.parquet", "write_ext.rds", "write_ext.txt", "write_ext.xlsx", "write_ext.xpt", "write_ext.yml", "write_file" ] } ], "_pkglogo": "https://github.com/NovoNordisk-OpenSource/connector/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/NovoNordisk-OpenSource/connector/raw/HEAD/README.md", "_rundeps": [ "arrow", "assertthat", "backports", "bit", "bit64", "cellranger", "checkmate", "cli", "clipr", "cpp11", "crayon", "DBI", "dplyr", "forcats", "fs", "generics", "glue", "haven", "hms", "jsonlite", "lifecycle", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "readr", "readxl", "rematch", "rlang", "S7", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr", "writexl", "yaml", "zephyr" ], "_vignettes": [ { "source": "connector.Rmd", "filename": "connector.html", "title": "connector", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Connector configuration", "Working example" ], "created": "2024-05-23 12:42:32", "modified": "2025-08-19 11:21:23", "commits": 10 }, { "source": "customize.Rmd", "filename": "customize.html", "title": "How to extend connector", "engine": "knitr::rmarkdown", "headings": [ "Creating a new connector", "Create custom generic method", "Use extra class for simple customization", "Special handling of files", "Add new file format" ], "created": "2024-08-05 07:16:37", "modified": "2025-08-20 06:13:08", "commits": 9 }, { "source": "Consistent-API.Rmd", "filename": "Consistent-API.html", "title": "Understanding Connector Package Methods", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Methods and Return Values", "Detailed Explanations", "read_cnt()", "write_cnt()", "list_content_cnt()", "remove_cnt()", "download_cnt()", "upload_cnt()", "create_directory_cnt()", "remove_directory_cnt()", "upload_directory_cnt()", "download_directory_cnt()", "tbl_cnt()" ], "created": "2025-08-19 11:21:23", "modified": "2025-08-19 11:21:23", "commits": 1 }, { "source": "without-yaml.Rmd", "filename": "without-yaml.html", "title": "Using connector without YAML files", "engine": "knitr::rmarkdown", "headings": [ "Creating Individual Connectors", "File System Connector", "Database Connector", "Using Individual Connectors", "Creating Multiple Connectors with connectors()", "Working with Multiple Connectors", "Mixed Storage Types", "Summary" ], "created": "2025-07-03 08:32:10", "modified": "2025-08-19 11:21:23", "commits": 2 } ], "_score": 8.559008394143213, "_indexed": true, "_nocasepkg": "connector", "_universes": [ "novonordisk-opensource" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.9004", "date": "2026-10-16T12:48:09.000Z", "distro": "resolute", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/db4a05c15ecaaeb5808031ed6a69962764b9843f293f45439e813cf7d1d592c8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0.9004", "date": "2026-10-16T12:48:04.000Z", "distro": "resolute", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/61d700881b25af0406635802779f1e71ff4b27969731d7d9abf6ca81bba0349d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.9004", "date": "2026-10-16T13:01:12.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/64e942815b26375ee657806996de175af0fb15b8ef04a04276c22cef46c04727", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0.9004", "date": "2026-10-16T13:02:32.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/20456a04cf4b791783e453209f60e6f56936ae6dc596ca0113f5e850ebe5ec74", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.9004", "date": "2026-10-16T12:47:57.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/5263591da952363beea343417717393a2460469d7f7855b04095b7f3bbd77060", "status": "success", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.9004", "date": "2026-10-16T12:47:14.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/cf072127092afef78f4c8952113ac0280d50b431df1bfd843f4ff95132a31686", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.9004", "date": "2026-10-16T12:47:03.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/172da84437e154c7d3d2737153d709802ce5d6c8b06da5ce4348b3f4fb78e603", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" }, { "r": "4.6.1", "os": "win", "version": "1.0.0.9004", "date": "2026-10-16T12:47:00.000Z", "commit": "93620e6bca65325c80655192b04d9be082e9cf0e", "fileid": "https://r2.ropensci.org/07528f2a4cf2b4354fc7f36902ceb772b3073cc87ab8446213acf2dad92c59a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/novonordisk-opensource/actions/runs/38902382007" } ] }